We are growing Barley this year. One major fungal issue with Barley is Loose Smut. It comes from the fungus Ustilago nuda, and can wipe out barley crops.
The fungus replaces the entire grain heads with a mass of black or brown fungal spores. There are no seeds to be harvested on these heads. You can usually pick these infected plants out because they are taller and mature faster than the rest of the field. The teliospores get transmitted to other grain heads where they infect the seeds through the flowering stigma, or directly through the ovaries. These teliospores give rise to basidiospores. These basidiospores germinate, and the mycelia invade the developing embryo in the seed. The fungus stays alive inside the seed until next season.
Currently there are two natural or organic methods of control. You can buying certified seed from fields that are clean, or you can pre-treat in hot water prior to planting. The hot water method is as follows:
Pre-soak the Barley seeds in water at 90°F for 4 hours. After the pre-soak, put the seeds in a hot tank between 124-126°F for 10 minutes. A single tank treatment of 4 hours at 113°F was also shown to help.¹
Synthetic Controls are to buy treated seed. Treated seed have a systemic fungicide that carry chemicals from the Carboxin group.
Sources:
1.) Annals of Applied Biology, Vol. 44 Issue 3, Sept 1956. Sourced March 26, 2017 http://onlinelibrary.wiley.com/doi/10.1111/j.1744-7348.1956.tb02138.x/abstract